Tags: nipreps/dmriprep
Tags
0.5.0 A new minor release going forward with some of the items of our roadmap. The most salient features are the integration of FSL Eddy and the adoption of the new *SDCFlows 2.0* API. * FIX: PEPOLAR & mapped fieldmaps not showing up in reports (#158) * FIX: Update to new *NiWorkflows* API (#156) * FIX: Change in _svgutils_ API (0.3.2) breaks our reportlet generation (#151) * FIX: Correctly check *SDCFlows*' registry of ``IntendedFor`` files (#141) * FIX: Honor ``--nprocs`` flag (#142) * ENH: *fieldmap-less* integration from *SDCFlows* 2.0 (#153) * ENH: Temporary integration of FSL Eddy (#144) * ENH: Connect fieldmap estimation to preprocessing pipeline of individual DWI runs (#140) * ENH: Refactor workflow for simplicity - explicit iteration over DWIs (#138) * ENH: Run fieldmap estimation using *SDCFlows* 2.0 (#137) * FIX/MAINT: Drop Python 3.6 + Revise Python environment (versions pinned) in Dockerfile (#146) * MAINT: Refactor Dockerfile with better use of miniconda (#155) * MAINT: Update *SDCFlows* pinning to the latest 2.0.0 release (#152) * DOC: Revise *dMRIPrep*'s road-map (#147) * DOC: Add FSL ``topup`` reference in citation boilerplate (#148) * DOC: change "functional" to "diffusion" (#143)
0.5.0rc0 A new minor release going forward with some of the items of our roadmap. The most salient features are the integration of FSL Eddy and the adoption of the new *SDCFlows 2.0* API. CHANGES ------- * FIX: Change in _svgutils_ API (0.3.2) breaks our reportlet generation (#151) * FIX: Correctly check *SDCFlows*' registry of ``IntendedFor`` files (#141) * FIX: Honor ``--nprocs`` flag (#142) * ENH: Temporary integration of FSL Eddy (#144) * ENH: Connect fieldmap estimation to preprocessing pipeline of individual DWI runs (#140) * ENH: Refactor workflow for simplicity - explicit iteration over DWIs (#138) * ENH: Run fieldmap estimation using *SDCFlows* 2.0 (#137) * FIX/MAINT: Drop Python 3.6 + Revise Python environment (versions pinned) in Dockerfile (#146) * MAINT: Update *SDCFlows* pinning to the latest 2.0.0 release (#152) * DOC: Revise *dMRIPrep*'s road-map (#147) * DOC: Add FSL ``topup`` reference in citation boilerplate (#148) * DOC: change "functional" to "diffusion" (#143)
0.4.0 A minor release including T1w-DWI registration with FreeSurfer's ``bbregister``. This minor release also includes some documentation improvements and a fair amount of maintenance tasks, the most salient of which is migrating our test data to a DataLad + GiHub + OSF infrastructure that will allow more flexibly update test datasets. * ENH: Use ``bbregister`` upstreamed to *NiWorkflows*, with sloppy mode (#131) * ENH: Port ``bbregister`` T1w-DWI registration from *fMRIPrep* (#125) * DOC: Link NeuroHackademy session's video. (#120) * DOC: Update readme and delete contributing guidelines in favour of nipreps website (#127) * DOC: Add base SVG file for the "figure1" (aka the workflow) flowchart (#124) * MAINT: Move test data to a full-datalad settings (#134) * MAINT: Move packaging tests from TravisCI to GitHub Actions (#135) * STY/MAINT: Preparing the first large overhaul of *dMRIPrep* (#130) * MAINT: Adding J. Veraart and E. Dickie to the contributors list (#126, #133)
0.3.0 A long overdue minor release initiating the 0.3.x series and including the milestones set for the 0.3.0 version in our roadmap. A full list of changes can be found below. * FIX: Revise vector tests broken when addressing other issues (#103) * FIX: Minor refactor of DWI/brainmasks utilities and dtypes (#101) * FIX: Test pin to ``reports_bug`` branch (#59) * FIX: CircleCI ``on_fail`` command (#61) * ENH: An initial implementation of SD estimation. (#97) * ENH: Minor refactor reorganizing base workflows, in prep for #97 (#110) * ENH: Use new ``DerivativesDataSink`` from *NiWorkflows* 1.2.0 (#108) * ENH: Port the new *anatomical fast-track* from *fMRIPrep* (#109) * ENH: Data-driven *b0* identification tool (#107) * ENH: Do not raise error in all instances of *b*-vecs/vals inconsistencies (#100) * ENH: Update ``DiffusionGradientTable`` interface to support vector reorientation (#89) * ENH: Update image utility output path behavior (#81) * ENH: Adopt ``config`` module (#88) * ENH: Added ``ds001771/sub-36`` dataset and FS derivatives (#67) * DOC: Add nipreps developers and year to ``LICENSE`` file (#69) * DOC: Roadmap documentation (#58) * DOC: Document the fact that we are using popylar/GA for usage tracking (#63) * MAINT: Remove the leftovers of AFQ in ``.afq/`` (#106) * MAINT: Refactor the workflow to use *Nipype* iterables (#105) * MAINT: Add ds001771 to the smoke-tests battery (#91) * MAINT: Revisions after previous maintenance commit (#83) (#85) * MAINT: Update dependencies (#83)