Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

rel: 2.12.0 #483

Merged
merged 6 commits into from
Mar 21, 2025
Merged

rel: 2.12.0 #483

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
cc5868c
chore(env): Bring env.yml into line with fmriprep
effigies Mar 19, 2025
e1160d7
chore: Bump numpy to avoid setuptools rug-pull
effigies Mar 19, 2025
0fece05
chore(env): Compile PyPI dependencies, remove min-requirements
effigies Mar 20, 2025
f418243
fix: Use nireports-vendored svgutils library
effigies Mar 21, 2025
6f55b53
fix: Address deprecation warning
effigies Mar 21, 2025
8d78b2f
doc: 2.12.0 release notes
effigies Mar 21, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
44 changes: 0 additions & 44 deletions .maint/update_requirements.py
View file
Open in desktop

This file was deleted.

16 changes: 16 additions & 0 deletions CHANGES.rst
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,3 +1,19 @@
2.12.0 (March 21, 2025)
=======================
Feature release in the 2.12.x series.

This release migrates from the deprecated ``niworkflows.reporting``
module to the ``nireports`` package.

* FIX: AttributeError for _ApplyCoeffsFieldInputSpec (#481)
* ENH: Allow running SyN SDC without using prior (#480)
* ENH: Allow estimated and fallback TotalReadoutTime (#477)
* RF: Transition from niworkflows reporting interfaces (#473)
* DOC: Fix broken link [skip ci] (#482)
* MNT: Add `defaults` to `conda` channels in `build-test-publish` GHA (#474)
* MNT: Update `niworkflows` version to 1.11.0 (#478)


2.11.0 (December 18, 2024)
==========================
Feature release in the 2.11.x series.
Expand Down
32 changes: 18 additions & 14 deletions env.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,24 +2,28 @@ name: sdcflows
channels:
- https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/
- conda-forge
# Update this ~yearly; last updated April 2023
# Update this ~yearly; last updated Mar 2025
dependencies:
- python=3.10
- python=3.12
# Intel Math Kernel Library for numpy
- mkl=2022.1
- mkl-service=2.4
- mkl=2024.2.2
- mkl-service=2.4.2
# Base scientific python stack; required by FSL, so pinned here
- numpy=1.26
- scipy=1.11
- matplotlib=3.8
- pandas=2.1
- h5py=3.8
- scipy=1.15
- matplotlib=3.9
- pandas=2.2
- h5py=3.13
# Dependencies compiled against numpy, best to stick with conda
- scikit-image=0.22
- scikit-image=0.25
# Utilities
- graphviz=6.0
- graphviz=11.0
# Workflow dependencies: ANTs
- ants=2.4.4
# Workflow dependencies: FSL (versions pinned in 6.0.6.2)
- fsl-fugue=2201.2
- fsl-topup=2203.1
- ants=2.5
# 5.4.1 and 5.4.2 cause segfaults with ants
# Try to remove this ASAP
# https://github.com/conda-forge/ants-feedstock/issues/19
- libitk=5.4.0
# Workflow dependencies: FSL (versions pinned in 6.0.7.13)
- fsl-fugue=2201.5
- fsl-topup=2203.5
15 changes: 0 additions & 15 deletions min-requirements.txt
View file
Open in desktop

This file was deleted.

4 changes: 2 additions & 2 deletions pyproject.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -27,10 +27,10 @@ dependencies = [
"nibabel >= 3.0",
"nipype >= 1.8.5",
"migas >= 0.4.0",
"nireports >= 24.1.0",
"nireports >= 25.0.1",
"niworkflows >= 1.11.0",
"nitransforms >= 24.1.0",
"numpy >= 1.22",
"numpy >= 1.23",
"pybids >= 0.16.4",
"scikit-image >= 0.18",
"scipy >= 1.8.1",
Expand Down
Loading
Loading