Repositories list

• scilpy

  Public
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

  Python

  •

  Other

  •7575 forks•9494 stars•3939 issues•1010 pull requests•Updated Apr 19, 2026Apr 19, 2026

• sf-pediatric

  Public
  sf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

  pipelinediffusion-mripediatrics

  pipelinediffusion-mripediatrics

  Nextflow

  •

  MIT License

  •11 fork•77 stars•44 issues•11 pull request•Updated Apr 15, 2026Apr 15, 2026

• sf-tractomics-documentation

  Public
  sf-tractomics documentation

  pipelinenextflowmri+ 2

  pipelinenextflowmridiffusionnf-neuro

  MDX

  •33 forks•00 stars•22 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• scilus_website

  Public
  SCIL website

  HTML

  •

  MIT License

  •77 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• sf-tractomics

  Public
  Diffusion MRI Pipeline for human brain

  Nextflow

  •

  MIT License

  •99 forks•66 stars•66 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• containers-scilus

  Public
  Files needed to build a container to run all scilus flows.

  Dockerfile

  •55 forks•44 stars•55 issues•11 pull request•Updated Apr 9, 2026Apr 9, 2026

• sf-mouse-documentation

  Public
  MDX

  •11 fork•00 stars•00 issues•22 pull requests•Updated Mar 23, 2026Mar 23, 2026

• sf-mouse

  Public
  Diffusion MRI Pipeline for Mouse

  mousedwibrain+ 3

  mousedwibrainnf-corenextflow-pipelinenf-neuro

  Nextflow

  •

  MIT License

  •11 fork•11 star•11 issue•11 pull request•Updated Mar 23, 2026Mar 23, 2026

• trigeminal

  Public
  Shell

  •33 forks•00 stars•00 issues•11 pull request•Updated Mar 19, 2026Mar 19, 2026

• connectoflow

  Public
  Nextflow

  •

  MIT License

  •55 forks•33 stars•22 issues•00 pull requests•Updated Mar 14, 2026Mar 14, 2026

• combine_flows

  Public
  Shell

  •66 forks•00 stars•11 issue•00 pull requests•Updated Feb 19, 2026Feb 19, 2026

• sf-pediatric-documentation

  Public
  MDX

  •11 fork•00 stars•00 issues•11 pull request•Updated Feb 10, 2026Feb 10, 2026

• tractometry_flow

  Public
  Nextflow

  •1313 forks•11 star•00 issues•11 pull request•Updated Feb 5, 2026Feb 5, 2026

• scil-documentation

  Public
  Documentation for the SCIL

  Python

  •2020 forks•44 stars•1212 issues•66 pull requests•Updated Jan 23, 2026Jan 23, 2026

• neurogister

  Public
  Python

  •11 fork•22 stars•00 issues•11 pull request•Updated Dec 13, 2025Dec 13, 2025

• register_flow

  Public
  Nextflow

  •22 forks•11 star•11 issue•00 pull requests•Updated Nov 18, 2025Nov 18, 2025

• teaching_imn359

  Public
  Python

  •22 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2025Nov 17, 2025

• tractoflow_documentation

  Public
  Documentation related files for tractoflow

  Python

  •66 forks•00 stars•22 issues•00 pull requests•Updated Nov 5, 2025Nov 5, 2025

• scilpy-bot

  Public
  Exploration of contextual approach for LLM and scilpy scripts

  Python

  •33 forks•00 stars•00 issues•00 pull requests•Updated Oct 10, 2025Oct 10, 2025

• extractor_flow

  Public
  Nextflow

  •22 forks•44 stars•00 issues•11 pull request•Updated Aug 29, 2025Aug 29, 2025

• quactography

  Public
  Python

  •

  Apache License 2.0

  •77 forks•11 star•44 issues•33 pull requests•Updated Aug 13, 2025Aug 13, 2025

• beyond_fa_challenge

  Public
  SCIL team project for the beyond_fa_challenge

  Nextflow

  •66 forks•00 stars•00 issues•33 pull requests•Updated Jun 27, 2025Jun 27, 2025

• noddi_flow

  Public
  Nextflow

  •

  MIT License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jun 26, 2025Jun 26, 2025

• rbx_flow

  Public
  Nextflow

  •

  MIT License

  •1111 forks•66 stars•22 issues•11 pull request•Updated Jun 24, 2025Jun 24, 2025

• freesurfer_flow

  Public
  Shell

  •

  MIT License

  •44 forks•11 star•22 issues•00 pull requests•Updated May 7, 2025May 7, 2025

• freewater_flow

  Public
  Nextflow

  •

  MIT License

  •55 forks•77 stars•11 issue•00 pull requests•Updated May 7, 2025May 7, 2025

• dmri-explorer

  Public
  A real-time diffusion MRI viewer for Linux and Windows using OpenGL 4.6.

  visualizationopenglcpp+ 1

  visualizationopenglcppdiffusion-mri

  C++

  •

  MIT License

  •77 forks•1010 stars•99 issues•11 pull request•Updated Apr 23, 2025Apr 23, 2025

• mrds_flow

  Public
  Nextflow

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2025Jan 28, 2025

• disconets_flow

  Public
  Nextflow

  •22 forks•00 stars•11 issue•00 pull requests•Updated Dec 19, 2024Dec 19, 2024

• Infant-DWI

  Public
  Complete pipeline to perform tractography from infant diffusion MRI data.

  Nextflow

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2024Nov 17, 2024