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@scilus

Sherbrooke Connectivity Imaging Lab

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI.

Sherbrooke Connectivity Imaging Laboratory

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications.

Useful links:

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  1. scilpy scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    Python 96 75

  2. tractoflow tractoflow Public

    TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

    Nextflow 63 27

  3. scil-documentation scil-documentation Public

    Documentation for the SCIL

    Python 4 20

Repositories

Showing 10 of 60 repositories
  • scilus/sf-mouse-documentation’s past year of commit activity
    MDX 0 1 0 1 Updated Mar 23, 2026
  • sf-mouse Public

    Diffusion MRI Pipeline for Mouse

    scilus/sf-mouse’s past year of commit activity
    Nextflow 1 MIT 1 1 0 Updated Mar 23, 2026
  • sf-tractomics Public

    Diffusion MRI Pipeline for human brain

    scilus/sf-tractomics’s past year of commit activity
    Nextflow 6 MIT 8 5 0 Updated Mar 19, 2026
  • trigeminal Public
    scilus/trigeminal’s past year of commit activity
    Shell 0 3 0 0 Updated Mar 19, 2026
  • connectoflow Public
    scilus/connectoflow’s past year of commit activity
    Nextflow 3 MIT 5 2 0 Updated Mar 14, 2026
  • sf-tractomics-documentation Public

    sf-tractomics documentation

    scilus/sf-tractomics-documentation’s past year of commit activity
    MDX 0 3 1 0 Updated Mar 13, 2026
  • scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    scilus/scilpy’s past year of commit activity
    Python 96 75 38 14 Updated Mar 13, 2026
  • scilus_website Public

    SCIL website

    scilus/scilus_website’s past year of commit activity
    HTML 0 MIT 7 0 0 Updated Mar 13, 2026
  • combine_flows Public
    scilus/combine_flows’s past year of commit activity
    Shell 0 6 1 0 Updated Feb 19, 2026
  • sf-pediatric Public

    sf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

    scilus/sf-pediatric’s past year of commit activity
    Nextflow 7 MIT 1 3 1 Updated Feb 11, 2026