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a82e872
Created new augmented_model_suggester and corresponding utils.
grace-sng7 May 19, 2025
63e6d82
Updated dependencies according to augmented_model_suggester and corre…
grace-sng7 May 19, 2025
b81e676
Updated LLM query prompt.
grace-sng7 May 19, 2025
2af6350
Minor fixes after testing AugmentedModelSuggester.
grace-sng7 May 20, 2025
e349bf5
Edited CauseNet search function.
grace-sng7 May 25, 2025
633d76d
Updated README.md to include augmented_model_suggester
grace-sng7 May 25, 2025
a474e5d
Update README.md
grace-sng7 May 27, 2025
d31fc79
Merge pull request #53 from grace-sng7/creating_augmented_suggester
grace-sng7 May 27, 2025
6b71deb
Update README.md
grace-sng7 May 27, 2025
d763517
Added augmented model suggester examples notebook
grace-sng7 May 27, 2025
e2f57e4
Merge pull request #55 from grace-sng7/creating_augmented_suggester
grace-sng7 May 27, 2025
072adc4
Uploaded augmented model suggester examples notebook again.
grace-sng7 May 27, 2025
8d82bd9
Merge branch 'py-why:creating_augmented_suggester' into creating_augm…
grace-sng7 May 27, 2025
fd17322
Merge pull request #56 from grace-sng7/creating_augmented_suggester
grace-sng7 May 27, 2025
05d9aa9
Set to ignore notebook testing for augmented model suggester examples
grace-sng7 May 27, 2025
0d1c2b5
Merge pull request #57 from grace-sng7/augmented_suggester
grace-sng7 May 27, 2025
00b61a2
Updated augmented_model_suggester_examples notebooks, docstrings, and…
grace-sng7 Jun 9, 2025
83a968f
Merge pull request #58 from grace-sng7/augmented_suggester
grace-sng7 Jun 9, 2025
2c6c7c2
Updated citations
grace-sng7 Jun 11, 2025
bfde305
Merge pull request #59 from grace-sng7/augmented_suggester
grace-sng7 Jun 11, 2025
9148c2a
Edited augmented model suggester llm_query method
grace-sng7 Jun 27, 2025
e868bb2
Merge pull request #60 from grace-sng7/augmented_suggester
grace-sng7 Jun 27, 2025
1e19398
Updated ignore_notebooks in tests
grace-sng7 Jun 27, 2025
ad04e9b
Merge pull request #61 from grace-sng7/augmented_suggester
grace-sng7 Jun 27, 2025
a90e0e4
Added onxruntime dependency
grace-sng7 Jun 28, 2025
59c6012
Merge pull request #62 from grace-sng7/augmented_suggester
grace-sng7 Jun 28, 2025
a68930b
onnxruntime dependency
grace-sng7 Jun 28, 2025
0f769a0
Merge pull request #63 from grace-sng7/augmented_suggester
grace-sng7 Jun 28, 2025
2e1ca67
Removed onnxruntime-silicon
grace-sng7 Jun 28, 2025
de4c85f
Merge pull request #64 from grace-sng7/augmented_suggester
grace-sng7 Jun 28, 2025
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14 changes: 13 additions & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -28,6 +28,7 @@ PyWhy-LLM seamlessly integrates into your existing causal inference process. Imp
from pywhyllm.suggesters.model_suggester import ModelSuggester
from pywhyllm.suggesters.identification_suggester import IdentificationSuggester
from pywhyllm.suggesters.validation_suggester import ValidationSuggester
from pywhyllm.suggesters.augmented_model_suggester import AugmentedModelSuggester
from pywhyllm import RelationshipStrategy

```
Expand All @@ -49,11 +50,22 @@ domain_expertises = modeler.suggest_domain_expertises(all_factors)
# Suggest a set of potential confounders
suggested_confounders = modeler.suggest_confounders(treatment, outcome, all_factors, domain_expertises)

# Suggest pair-wise relationship between variables
# Suggest pair-wise relationships between variables
suggested_dag = modeler.suggest_relationships(treatment, outcome, all_factors, domain_expertises, RelationshipStrategy.Pairwise)
```

### Retrieval Augmented Generation (RAG)-based Modeler

```python
# Create instance of Modeler
modeler = AugmentedModelSuggester('gpt-4')

treatment = "smoking"
outcome = "lung cancer"

# Suggest pair-wise relationship between two given variables, utilizing CauseNet for RAGing the LLM
suggested_relationship = modeler.suggest_relationships(treatment, outcome)
```

### Identifier

Expand Down
156 changes: 156 additions & 0 deletions docs/notebooks/augmented_model_suggester_examples.ipynb
Original file line number Diff line number Diff line change
@@ -0,0 +1,156 @@
{
"nbformat": 4,
"nbformat_minor": 0,
"metadata": {
"colab": {
"provenance": []
},
"kernelspec": {
"name": "python3",
"display_name": "Python 3"
},
"language_info": {
"name": "python"
}
},
"cells": [
{
"cell_type": "code",
"source": [
"pip install dotenv"
],
"metadata": {
"id": "cmZerbMu6Uk4"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "EulKv3Km4nMa"
},
"outputs": [],
"source": [
"from dotenv import load_dotenv\n",
"import os\n",
"\n",
"load_dotenv()\n",
"\n",
"os.environ[\"OPENAI_API_KEY\"] = '' # specify your key here"
]
},
{
"cell_type": "code",
"source": [
"pip install pywhyllm"
],
"metadata": {
"collapsed": true,
"id": "83sxVcP97xlH"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "markdown",
"source": [
"Here we introduce the AugmentedModelSuggester class. Creating an instance of it enables the chosen LLM to utilize Retrieval Augmented Generation (RAG) to determine causality. It currently does this by searching the CauseNet dataset for a relevant causal pair and augmenting the LLM with the corresponding evidence/information stored in the dataset.\n",
"\n",
"CauseNet is a large-scale knowledge base of causal relations extracted from the web, created by Heindorf et al. (2020). CauseNet is available at [causenet.org](https://causenet.org) and is licensed under Creative Commons Attribution 4.0 International (CC BY 4.0)."
],
"metadata": {
"id": "DjYECuX84vbN"
}
},
{
"cell_type": "code",
"source": [
"from pywhyllm.suggesters.augmented_model_suggester import AugmentedModelSuggester\n",
"\n",
"model = AugmentedModelSuggester('gpt-4')"
],
"metadata": {
"id": "VdfEKuDLEYcU"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "markdown",
"source": [
"AugmentedModelSuggester can suggest the pairwise relationship given two variables. If a relevant causal pair is found in CauseNet, the LLM is augmented with the aforementioned information in CauseNet. If not found, by default, the LLM will rely on its own knowledge."
],
"metadata": {
"id": "dES0LwHV57eX"
}
},
{
"cell_type": "code",
"source": [
"result = model.suggest_pairwise_relationship(\"smoking\", \"lung cancer\")"
],
"metadata": {
"id": "D85ec6Pk5JzA"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "code",
"source": [
"result"
],
"metadata": {
"id": "W3bFehXh5SQl"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "code",
"source": [
"result = model.suggest_pairwise_relationship(\"income\", \"exercise level\")"
],
"metadata": {
"id": "odFkp921hQsX"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "code",
"source": [
"result"
],
"metadata": {
"id": "ZIeStj9OwIPe"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "code",
"source": [
"result = model.suggest_pairwise_relationship(\"flooding\", \"rain\")"
],
"metadata": {
"id": "Fm5XCFrRwKsV"
},
"execution_count": null,
"outputs": []
},
{
"cell_type": "code",
"source": [
"result"
],
"metadata": {
"id": "HDo098ICwzi7"
},
"execution_count": null,
"outputs": []
}
]
}
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