[BF][ENH] Harmonization works better now - #124
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arnaudbore merged 8 commits intoSep 3, 2026
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.5.2. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
Manonedde
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Sep 3, 2026
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It just occurred to me that I don't see the model listed as a parameter, given that clinical-combat also includes pairwise (the linear version of clinical). Do we want to require the use of clinical, or allow users to switch to pairwise?
Manonedde
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Sep 3, 2026
Co-authored-by: Manon Edde <60670074+Manonedde@users.noreply.github.com>
Co-authored-by: Manon Edde <60670074+Manonedde@users.noreply.github.com>
Co-authored-by: Manon Edde <60670074+Manonedde@users.noreply.github.com>
Co-authored-by: Manon Edde <60670074+Manonedde@users.noreply.github.com>
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).