[ENH] Add profile full_pipeline + fix stubrun#98
[ENH] Add profile full_pipeline + fix stubrun#98arnaudbore wants to merge 6 commits intoscilus:devfrom
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.5.1. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
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What is this for? Some tasks will probably fail with a single CPU.
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It's also not specific. Following docs, it falls off behind all other selectors. Report if it's cornering use-cases correctly. From my gist, this gets applied if no other config gets loaded
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It's also not specific. Following docs, it falls off behind all other selectors. Report if it's cornering use-cases correctly. From my gist, this gets applied if no other config gets loaded
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| // run all test with defined profile(s) from the main nextflow.config | ||
| profile "test,full_pipeline" | ||
| profile "test,full_pipeline,stubRun" |
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Syntax opinion ? (Follow snake_case)
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).