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Multimercluster error in tutorial #357

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sirius777coder opened this issue Sep 24, 2024 · 2 comments
Open

Multimercluster error in tutorial #357

sirius777coder opened this issue Sep 24, 2024 · 2 comments
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@sirius777coder
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sirius777coder commented Sep 24, 2024

Hi ,
Great job! I encountered an issue while using Foldseek Multimer Cluster:

When running the tutorial code foldseek easy-multimercluster example/ clu tmp --multimer-tm-threshold 0.65 --chain-tm-threshold 0.5 --interface-tm-threshold 0.65, I received an error stating that there is no module called interface-tm-threshold. Can I simply replace it with interface-lddt-threshold?

@sooyoung-cha
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Yes. it was a typo.
interface-lddt-threshold should be used.
Thank you for notifying us

@sirius777coder
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Thank you. Does the interface-lddt-threshold significantly affect the clustering result? I am looking to limit my clustering.

@martin-steinegger martin-steinegger added the question Further information is requested label Jan 19, 2025
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