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90 Open 271 Closed
90 Open 271 Closed
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Issues list

FoldSeek Behavior with PolyGLY Backbone Structures
#412 opened Jan 20, 2025 by SarahKnapp1
7
Clustering performance issue: Foldseek exceeds expected runtime
#403 opened Dec 19, 2024 by YFeriel
2
foldseek result2msa a3m database contains unusable, non-significant alignments due to poor choice of cluster representative
#402 opened Dec 17, 2024 by shiraz-shah
foldseek result2msa on a clustering result creates an a3m database where cluster ids are inconsistent with createtsv output
#401 opened Dec 17, 2024 by shiraz-shah
foldseek createtsv on a clustering result outputs a tsv file where representatives are outliers, not centroids
#400 opened Dec 17, 2024 by shiraz-shah
2
Creating an tutorial video in japanese for Foldseek Search Server
#396 opened Dec 13, 2024 by yonesora56
1
Access to Multi-Domain Benchmark Dataset
#395 opened Dec 12, 2024 by nwod-edispu
Foldseek clustering stuck for days with errors
#390 opened Dec 2, 2024 by YFeriel
1
Behavior of --alt-ali in TM mode enhancement New feature or request
#388 opened Nov 28, 2024 by yonatan212
1
Getting BLAST-like e-value for TM-align?
#386 opened Nov 26, 2024 by meltzj
1
Expose increasing sensitivity search in FS
#379 opened Nov 2, 2024 by milot-mirdita
1
Duplicate Foldseek hits for PDB 1hxz chain D searching pdb100
#376 opened Oct 29, 2024 by tomgoddard
2
More columns to HTML formatted output enhancement New feature or request
#374 opened Oct 25, 2024 by jakewendt
Sort the tabs when output in HTML format enhancement New feature or request
#372 opened Oct 22, 2024 by jakewendt
Highly similar structures are clustered into separate groups or result in error
#371 opened Oct 22, 2024 by NatureGeorge
2
Option to hide queries with no matches in HTML output enhancement New feature or request
#370 opened Oct 22, 2024 by jakewendt
Cluster based on e-value/tmscore ?
#364 opened Oct 11, 2024 by Wangchentong
3
identify shared domain or conformation between 2 pdb files question Further information is requested
#363 opened Oct 7, 2024 by xjhzjucas
Multimercluster error in tutorial question Further information is requested
#357 opened Sep 24, 2024 by sirius777coder
@sooyoung-cha @rachelse
2
Coverage Mode Option Not Affecting TM Scores in HTML Output
#355 opened Sep 22, 2024 by khatrics16
Can protein complexes (multi-chain) structures be clustered? [not bug]
#349 opened Sep 18, 2024 by minirose2021
2
why the download table is slightly different to the output of the webserver
#341 opened Aug 30, 2024 by Huilin-Li
An error occurred in convertalis when outputting alntmscore、fident and prob
#340 opened Aug 29, 2024 by TigerWindWood
4
Discrepancy in Search Results for W_H Domain Across Different Database Sizes
#338 opened Aug 28, 2024 by yonatan212
1
Clustering of multi-chain proteins
#337 opened Aug 28, 2024 by jiaweiguan
3
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