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Update poco and libsbml. #55

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Update poco and libsbml. #55

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6292304
Update poco and libsbml.
luciansmith Nov 26, 2025
b1bf419
ZLIB->ZLIBSTATIC in poco.
luciansmith Nov 26, 2025
8b16af7
More ZLIB->ZLIBSTATIC in poco.
luciansmith Nov 26, 2025
f71f0a1
Update SBMLNetwork, libsbml.
luciansmith Jan 16, 2026
eae5b1c
Update SBMLNetwork so it'll compile in context.
luciansmith Jan 17, 2026
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2 changes: 1 addition & 1 deletion third_party/SBMLNetwork
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Submodule SBMLNetwork updated 11 files
+5 −5 .github/workflows/build.yml
+1 −1 CMakeLists.txt
+12 −13 src/CMakeLists.txt
+41 −0 src/bindings/python/ctypes/sbmlnetwork/tests/test_user_interface_layer.py
+47 −13 src/features/autolayout/libsbmlnetwork_autolayout_curve.cpp
+4 −0 src/features/autolayout/libsbmlnetwork_autolayout_curve.h
+12 −0 src/features/fix_elements/libsbmlnetwork_fix_element_position.cpp
+4 −0 src/features/fix_elements/libsbmlnetwork_fix_element_position.h
+76 −17 src/features/user_data/libsbmlnetwork_user_data.cpp
+6 −0 src/features/user_data/libsbmlnetwork_user_data.h
+6 −0 src/libsbmlnetwork_layout.cpp
2 changes: 1 addition & 1 deletion third_party/libsbml
Open in desktop
Submodule libsbml updated 83 files
+3 −0 .github/workflows/brief.yml
+1 −0 .github/workflows/extensive.yml
+5 −1 CMakeLists.txt
+17 −12 CMakeModules/FindZLIB.cmake
+19 −2 NEWS.txt
+3 −3 README.md
+1 −1 VERSION.txt
+12 −12 configure
+20 −1 examples/c++/inferReactions.cpp
+2 −5 src/CMakeLists.txt
+3 −0 src/bindings/csharp/CMakeLists.txt
+1 −0 src/bindings/swig/libsbml.i
+6 −0 src/sbml/SBMLError.h
+102 −0 src/sbml/SBMLErrorTable.h
+3 −3 src/sbml/common/libsbml-version.h
+716 −411 src/sbml/conversion/ExpressionAnalyser.cpp
+310 −134 src/sbml/conversion/ExpressionAnalyser.h
+102 −1 src/sbml/conversion/SBMLConverter.cpp
+9 −0 src/sbml/conversion/SBMLConverter.h
+0 −4 src/sbml/conversion/SBMLRateOfConverter.cpp
+0 −2 src/sbml/conversion/SBMLRateOfConverter.h
+592 −176 src/sbml/conversion/SBMLRateRuleConverter.cpp
+49 −17 src/sbml/conversion/SBMLRateRuleConverter.h
+109 −57 src/sbml/conversion/SBMLReactionConverter.cpp
+14 −4 src/sbml/conversion/SBMLReactionConverter.h
+1,933 −0 src/sbml/conversion/test/TestExpressionAnalyser.cpp
+874 −0 src/sbml/conversion/test/TestRoundtripConverter.cpp
+9 −0 src/sbml/conversion/test/TestRunner.c
+731 −213 src/sbml/conversion/test/TestSBMLRateRuleConverter.cpp
+319 −190 src/sbml/conversion/test/TestSBMLReactionConverter.cpp
+0 −52 src/sbml/conversion/test/test-data/mraterules2.xml
+0 −57 src/sbml/conversion/test/test-data/mraterules5.xml
+0 −33 src/sbml/conversion/test/test-data/mreact2.xml
+0 −44 src/sbml/conversion/test/test-data/mreact5.xml
+3 −0 src/sbml/conversion/test/test-data/rn_rr_fail_90101.xml
+32 −0 src/sbml/conversion/test/test-data/rn_rr_fail_90102_1.xml
+16 −0 src/sbml/conversion/test/test-data/rn_rr_fail_90102_2.xml
+44 −0 src/sbml/conversion/test/test-data/rn_rr_fail_90103.xml
+26 −0 src/sbml/conversion/test/test-data/rn_rr_fail_90104.xml
+25 −0 src/sbml/conversion/test/test-data/rn_rr_fail_90104_1.xml
+34 −0 src/sbml/conversion/test/test-data/rn_rr_pass_90104.xml
+25 −0 src/sbml/conversion/test/test-data/rr_rn_multi_compartments.xml
+35 −0 src/sbml/conversion/test/test-data/rr_rn_multi_compartments_reactions.xml
+165 −0 src/sbml/conversion/test/test-data/test
+81 −0 src/sbml/conversion/test/test-data/valid_013_bio_from_rr_original.xml
+42 −41 src/sbml/conversion/test/test-data/valid_013_bio_original.xml
+94 −0 src/sbml/conversion/test/test-data/valid_013_rr_from_bio_from_rr_original.xml
+48 −45 src/sbml/conversion/test/test-data/valid_013_rr_original.xml
+102 −81 src/sbml/conversion/test/test-data/valid_014_bio.xml
+110 −99 src/sbml/conversion/test/test-data/valid_014_rr.xml
+63 −63 src/sbml/conversion/test/test-data/valid_015_bio.xml
+54 −54 src/sbml/conversion/test/test-data/valid_015_rr.xml
+53 −53 src/sbml/conversion/test/test-data/valid_016_bio.xml
+41 −41 src/sbml/conversion/test/test-data/valid_016_rr.xml
+86 −86 src/sbml/conversion/test/test-data/valid_017_bio.xml
+67 −67 src/sbml/conversion/test/test-data/valid_017_rr.xml
+1 −2 src/sbml/conversion/test/test-data/valid_07_rr.xml
+77 −0 src/sbml/conversion/test/test-data/valid_51_bio.xml
+54 −0 src/sbml/conversion/test/test-data/valid_51_rr.xml
+175 −0 src/sbml/conversion/test/test-data/valid_52_bio.xml
+154 −0 src/sbml/conversion/test/test-data/valid_52_rr.xml
+193 −0 src/sbml/conversion/test/test-data/valid_53_bio.xml
+158 −0 src/sbml/conversion/test/test-data/valid_53_rr.xml
+201 −0 src/sbml/conversion/test/test-data/valid_54_bio.xml
+164 −0 src/sbml/conversion/test/test-data/valid_54_rr.xml
+201 −0 src/sbml/conversion/test/test-data/valid_55_bio.xml
+163 −0 src/sbml/conversion/test/test-data/valid_55_rr.xml
+2 −1 src/sbml/html2md/html2md.cpp
+1 −0 src/sbml/html2md/table.cpp
+1 −1 src/sbml/maddy/checklistparser.h
+2 −2 src/sbml/maddy/orderedlistparser.h
+2 −2 src/sbml/maddy/quoteparser.h
+1 −1 src/sbml/maddy/unorderedlistparser.h
+1,569 −141 src/sbml/math/ASTNode.cpp
+55 −4 src/sbml/math/ASTNode.h
+1,441 −4 src/sbml/math/test/TestDerivativeFunctions.cpp
+36 −0 src/sbml/math/test/TestInferRnFunctions.cpp
+290 −0 src/sbml/math/test/TestLevelNodeFunction.cpp
+682 −0 src/sbml/math/test/TestRefactoringFunctions.cpp
+7 −1 src/sbml/math/test/TestRunner.c
+5 −5 src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp
+0 −1 src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp
+7 −7 src/sbml/util/util.cpp
2 changes: 1 addition & 1 deletion third_party/poco
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Submodule poco updated 524 files
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