A library of tools useful for Lifemapper and related computations
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Jul 31, 2023 - Python
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presence-absence-matrix
Here are 5 public repositories matching this topic...
This repository houses analyses that can be deployed on BiotaPhy compute resources for access to high throughput computing
pam phylogenetic-trees biodiversity dendropy ancestral-character-reconstruction presence-absence-matrix phylogenetic-beta-diversity
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Nov 22, 2019 - Python
Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results
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May 24, 2022 - Python
Retrieves matrix with number of gene/protein hits per query in the blast result. Takes blast tabular file as input.
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Feb 29, 2024 - Python
This Colab-based tool automates the process of identifying the phylogenetic distribution of one or more genes across a user-defined set of genomes. It generates a presence/absence matrix and visualizes it alongside a taxonomic tree as a heatmap.
phylogenetics ncbi-taxonomy phylogenetic-profile ncbi-blast presence-absence-matrix entrez-databases
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May 20, 2025 - Jupyter Notebook
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