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Releases: JohnsonBiophysicsLab/SLIMED

SLIMED v0.1.0

12 Aug 20:00

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Initial Release - this SLIMED version is used in the following publication:

Yue Moon Ying, Margaret E. Johnson. Membrane bending energy selects for compact growth of protein assemblies. In Prep.

Currently, we implemented:

  • Membrane mechanical energy minimization based on modified Helfrich energy function with:
  • Small patch of insertion (modeled implicitly as changed C0)
  • Harmonically bonded protein scaffolding
  • Simple brownian dynamics

Full Changelog: https://github.com/JohnsonBiophysicsLab/SLIMED/commits/v0.1.0