Initial Release - this SLIMED version is used in the following publication:
Yue Moon Ying, Margaret E. Johnson. Membrane bending energy selects for compact growth of protein assemblies. In Prep.
Currently, we implemented:
- Membrane mechanical energy minimization based on modified Helfrich energy function with:
- Small patch of insertion (modeled implicitly as changed C0)
- Harmonically bonded protein scaffolding
- Simple brownian dynamics
Full Changelog: https://github.com/JohnsonBiophysicsLab/SLIMED/commits/v0.1.0