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    • Benchmarking Python package for functional miRNA target prediction
      Python
      01252Updated May 8, 2026May 8, 2026
    • Finding substitution weights and gap penalties from pairs of labeled biological sequences
      Python
      MIT License
      0101Updated May 7, 2026May 7, 2026
    • varMT

      Public
      Store and retrieve aggregated population frequencies for genomic variants.
      Python
      0100Updated May 6, 2026May 6, 2026
    • Autonomous agentic system for supervised machine learning model development.
      Python
      MIT License
      52310Updated May 6, 2026May 6, 2026
    • A pipeline to search GEO/SRA for miRNA-related experiments (RNA-seq, CLIP, qPCR, etc.) with support for filters such as species, cell lines, perturbation type, …
      Python
      MIT License
      0000Updated May 5, 2026May 5, 2026
    • Working Repository for the MiRbind 2.0 project
      Python
      MIT License
      0402Updated May 4, 2026May 4, 2026
    • Python
      0421Updated Apr 29, 2026Apr 29, 2026
    • Genomic interval annotation tool with transcript-first logic, supporting Ensembl GTFs, relative coordinates, and detailed region classification.
      Python
      MIT License
      0010Updated Apr 21, 2026Apr 21, 2026
    • PostGram

      Public
      Localization-aware modeling of post-transcriptional regulation in 3′UTRs
      Python
      MIT License
      0000Updated Apr 16, 2026Apr 16, 2026
    • Python
      0000Updated Mar 19, 2026Mar 19, 2026
    • ParaDISM

      Public
      ParaDISM - A highly precise algorithmic pipeline for accurate mapping of NGS reads from highly homologous regions
      Python
      MIT License
      0200Updated Mar 12, 2026Mar 12, 2026
    • Code for the PHACT-miRBind Project
      Python
      0000Updated Jan 20, 2026Jan 20, 2026
    • miRAlign

      Public
      Elucidating miRNA-target interactions through a position-aware local alignment with learnable weights
      Jupyter Notebook
      MIT License
      0000Updated Jan 16, 2026Jan 16, 2026
    • HTML
      0000Updated Sep 19, 2024Sep 19, 2024
    • Jupyter Notebook
      0300Updated Jun 13, 2024Jun 13, 2024
    • templates

      Public
      Coding Templates and Best Practices
      Python
      0000Updated May 14, 2024May 14, 2024
    • Jupyter Notebook
      0200Updated Oct 18, 2023Oct 18, 2023
    • R
      Apache License 2.0
      3000Updated Sep 3, 2023Sep 3, 2023
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